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flatpak: Dont re-download and unpack tar archive if target dir is nonempty

Sam Spilsbury requested to merge smspillaz/gnome-builder:dont-redownload-flatpak-archive-sources into master

It was probably non-empty because we had already downloaded and unpacked the source code there. Don't overwrite the user's work just because builder was re-opened with that manifest name.

This is similar behavior to the git method, which does not clone or update the repo if it already exists.

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