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flatpak: Re-order modules and fix pandoc build

Created by: BrainBlasted

For flatpaks the last module should usually be the application being installed. In this case, uberwriter. In addition, the build process for pandoc made an assumption that /app/bin would be present after building the uberwriter module, but since that wasn't the case /app/bin/pandoc must be created in advance.

Fixes issues where the flatpak build wouldn't run due to "missing" python modules.

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