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Bump libgit2 to version 0.28

Ghost User requested to merge wip/albfan/libgit2-0.28 into master

Update flatpak to use libgit2 v0.28

This breaks test suite due to usage of https://valadoc.org/libgit2-glib-1.0/Ggit.MergeFileFlags.STYLE_DIFF3.html as default style for conflicts.

We need to fix to work on 0.27 and 0.28. O e option is change test assertions depending on libgit2 version and the other is to force old diff style(as default changed)

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