diff --git a/build-aux/flatpak/org.gnome.Builder.json b/build-aux/flatpak/org.gnome.Builder.json
index 0fde99842b5c6561dd2bf52f53228dcf16546423..7ad16b1210a5c7b4e4d955a939df3d404b6720cb 100644
--- a/build-aux/flatpak/org.gnome.Builder.json
+++ b/build-aux/flatpak/org.gnome.Builder.json
@@ -139,7 +139,9 @@
             "config-opts" : [
                 "--disable-polkitd",
                 "--disable-man-pages",
-                "--disable-introspection"
+                "--disable-introspection",
+                "--enable-libsystemd-login=no",
+                "--with-systemdsystemunitdir=no"
             ],
             "rm-configure" : true,
             "cleanup" : [
@@ -416,7 +418,8 @@
         {
             "name" : "ostree",
             "config-opts" : [
-                "--disable-man"
+                "--disable-man",
+                "--without-libsystemd"
             ],
             "cleanup" : [
                 "/bin",