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The git version of GEGL is known to work with the following autotools:
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- GNU autoconf 2.54
- GNU automake 1.9.6
- GNU libtool 1.5
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Newer versions of these tools will probably work.
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To compile a git version of GEGL on your system, you will need to take
several steps to setup the tree for compilation.  You can do all these
steps at once by running:
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gegl> ./autogen.sh
   
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Basically this does the following for you (but see autogen.sh for
exactly what is happening):
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gegl> aclocal 
gegl> automake 
gegl> autoconf 
gegl> configure
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The autogen in GEGL also uses ruby to generate some of the plug-ins, and
the API reference.

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Before running autogen.sh, make sure you have libtool in your path.  
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Note that autogen.sh runs configure for you. If you wish to pass options 
to configure you can give those options to autogen.sh and they
will be passed on.